Lesson: Mutations

Contributed by: National Science Foundation GK-12 and Research Experience for Teachers (RET) Programs, University of Houston

A photograph shows a white tiger with black stripes.
A genetic mutation causes white coats in some tigers.
copyright
Copyright © 2009 Tony Hisgett, Wikimedia Commons (CC BY 2.0) https://commons.wikimedia.org/wiki/File:White_Tiger_6_%283865790598%29.jpg https://creativecommons.org/licenses/by/2.0/deed.en

Summary

Students learn about mutations to both DNA and chromosomes, and uncontrolled changes to the genetic code. They are introduced to small-scale mutations (substitutions, deletions and insertions) and large-scale mutations (deletion duplications, inversions, insertions, translocations and nondisjunctions). The effects of different mutations are studied as well as environmental factors that may increase the likelihood of mutations. A PowerPoint® presentation and pre/post-assessments are provided.
This engineering curriculum meets Next Generation Science Standards (NGSS).

Engineering Connection

Genetic engineers are able to manipulate the genomes of organisms, however, the consequences are not always beneficial. In order to prevent harmful and unwanted mutations, it is important for engineers to understand what effects result from certain changes to organisms’ genomes (several of which can be seen by studying natural mutations) and how environmental factors can affect the probability of mutations occurring.

Pre-Req Knowledge

Students should have a good understanding of how DNA is copied from one cell to another through either meiosis or mitosis. They should also know that changes in the DNA or genes result in the alteration of proteins that may or may not cause noticeable changes to organisms’ traits.

Learning Objectives

After this lesson, students should be able to:

  • List the different types of mutations.
  • Describe some possible effects of mutations.
  • Explain the role of mutations in genetic syndromes.

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Educational Standards

Each TeachEngineering lesson or activity is correlated to one or more K-12 science, technology, engineering or math (STEM) educational standards.

All 100,000+ K-12 STEM standards covered in TeachEngineering are collected, maintained and packaged by the Achievement Standards Network (ASN), a project of D2L (www.achievementstandards.org).

In the ASN, standards are hierarchically structured: first by source; e.g., by state; within source by type; e.g., science or mathematics; within type by subtype, then by grade, etc.

  • Make and defend a claim based on evidence that inheritable genetic variations may result from: (1) new genetic combinations through meiosis, (2) viable errors occurring during replication, and/or (3) mutations caused by environmental factors. (Grades 9 - 12) Details... View more aligned curriculum... Do you agree with this alignment?
  • The sciences of biochemistry and molecular biology have made it possible to manipulate the genetic information found in living creatures. (Grades 9 - 12) Details... View more aligned curriculum... Do you agree with this alignment?
  • identify components of DNA, and describe how information for specifying the traits of an organism is carried in the DNA; (Grades 9 - 11) Details... View more aligned curriculum... Do you agree with this alignment?
  • identify and illustrate changes in DNA and evaluate the significance of these changes; (Grades 9 - 11) Details... View more aligned curriculum... Do you agree with this alignment?
Suggest an alignment not listed above

Introduction/Motivation

(Be ready to show the class the 22-slide Mutations Presentation, a PowerPoint® file.)

(Slides 1-3) Introduction/Motivation: Who can tell me how Cyclops from the X-Men got his superpowers? (Answer: He’s a mutant and was born with his superpowers.) What about the Hulk? (Answer: Mutation due to exposure to gamma radiation.) And Spiderman? (Answer: Mutated when bitten by a radioactive spider.)

So, we have identified three superheroes who all gained some sort of special abilities from mutations. For Cyclops and any of the X-Men, the powers were caused by a pre-birth DNA or genome mutation. The Hulk and Spiderman powers happened a little differently since the mutations occurred later when they were exposed to radioactivity in some form or another.

Today we will discuss some of the science behind mutations. While the superpowers and abilities we just discussed may be fictional, it is true that mutations can have significant impacts on people and evidence exists that radiation exposure can lead to an increased rate of mutations. First, we will discuss the different types of mutations, then where or how they can occur. We will also talk about some environmental factors that can influence the rate of mutations, and finish by looking at some possible effects of mutations.

(Continue on, presenting the content in the Lesson Background section.)

Lesson Background and Concepts for Teachers

(Slide 4) Types of Mutations: Mutations can be classified several different ways. In this lesson, we will focus on sorting mutations by their effects on the structure of DNA or a chromosome. For this categorization, mutations can be organized into two main groups, each with multiple specific types. The two general categories are small-scale and large-scale mutations.

Small-scale mutations are those that affect the DNA at the molecular level by changing the normal sequence of nucleotide base pairs. These types of mutations may occur during the process of DNA replication during either meiosis or mitosis. Three possible types of small-scale mutations may occur: substitutions, deletions and insertions.

(Slide 5) Also referred to as a “point” mutation, substitutions occur when a nucleotide is replaced with a different nucleotide in the DNA sequence. The most common substitutions involve the switching of adenine and guanine (A ↔ G) or cytosine and thymine (C ↔ T). Since the total number of nucleotides is conserved, this type of mutation only affects the codon for a single amino acid.

(Slide 6) A deletion is the removal of a nucleotide from the DNA sequence. Deletions are referred to as “frameshift” mutations because the removal of even a single nucleotide from a gene subsequently alters every codon after the mutation (it is said that the reading frame is “shifted”); this is illustrated in Figure 1 for both deletions and insertions. The change in the number of nucleotides changes which ones are normally read together.

Four boxes illustrate normal DNA and three small-scale mutation examples. 1) A normal DNA sequence (TAT, CAT, CCT, AAG, GTA) and the resultant proteins (Tyr, His, Pro, Lys, Val), 2) the same normal DNA sequence with one base substituted for another (CCT > CGT) and the new resultant protein (Arg), 3) the same normal DNA sequence with a base inserted and the new resultant protein, 4) the same normal DNA sequence with a base deleted and the new resultant protein.
Figure 1. Example small-scale mutations. Substitutions are point mutations and change only one amino acid in the protein. Insertions and deletions are frameshift mutations and change every amino acid coded for after the mutation.
copyright
Copyright © 2015 Matthew Zelisko, GK-12 Program, University of Houston

(Slide 7) An insertion is the addition of a nucleotide to the DNA sequence. Similar to a deletion, insertions are also considered “frameshift” mutations and alter every codon that is read after the mutation.

(Slide 8) Large-scale mutations are those that affect entire portions of a chromosome. Some large-scale mutations affect only single chromosomes, others occur across nonhomologous pairs. Some large-scale mutations in the chromosome are analogous to the small-scale mutations in DNA; the difference is that for large-scale mutations, entire genes or sets of genes are altered rather than only single nucleotides of the DNA. Single chromosome mutations are most likely to occur by some error in the DNA replication stage of cell growth, and therefore could occur during meiosis or mitosis. Mutations involving multiple chromosomes are more likely to occur in meiosis during the crossing-over that occurs during the prophase I. Most of these mutations are illustrated in Figure 2.

A drawing shows five chromosome mutations. 1) a chromosome with a portion removed (deletion), 2) a chromosome with a portion duplicated (duplication), 3) a chromosome with a portion inverted (inversion) 4) two chromosomes with a portion of one removed and inserted in the other (insertion), and 5) two chromosomes with a portion of both removed and switched with the other (translocation).
Figure 2. Large-scale mutations affect entire sections of a chromosome.
copyright
Copyright © 2009 YassineMrabet, Wikimedia Commons {PD} http://commons.wikimedia.org/wiki/File:Chromosomes_mutations-en.svg

(Slide 9) Large-scale deletion is a single chromosome mutation involving the loss of one or more gene(s) from the parent chromosome.

(Slide 10) Duplication is the addition of one or more gene(s) that are already present in the chromosome. This is a single chromosome mutation.

(Slide 11) An inversion mutation involves the complete reversal of one or more gene(s) within a chromosome. The genes are present, but the order is backwards from the parent chromosome. This is also a single chromosome mutation.

(Slide 12) Large-scale insertion involves multiple chromosomes. For this type of insertion, one or more gene(s) are removed from one chromosome and inserted into another nonhomologous chromosome. This can occur by an error during the prophase I of meiosis when the chromosomes are swapping genes to increase diversity.

(Slide 13) Translocation also involves multiple nonhomologous chromosomes. Here, the chromosomes swap one or more gene(s) with another chromosome.

(Slide 14) A nondisjunction mutation does not involve any errors in DNA replication or crossing-over. Instead, these mutations occur during the anaphase and telophase when the chromosomes are not separated correctly into the new cells. Common nondisjunctions are missing or extra chromosomes. When gametes with nondisjunctions are produced during meiosis, it can result in offspring with monosomy or trisomy (a missing or extra homologous chromosome).

(Slide 15) The effects of mutations may range from nothing to the unviability of a cell. All mutations affect the proteins that are created during protein synthesis, but not all mutations have a significant impact. The effects can also be looked at differently between the small-scale and large-scale mutations.

(Slide 16) The effects of small-scale mutations: Frameshift mutations, insertions and deletions on genes have similar effects. When a nucleotide is added or removed from the DNA sequence, the sequence is shifted and every codon after the mutation is changed, as shown in Figure 1. This results in severe alterations to the proteins that are encoded by the DNA, which can lead to a loss of functionality for those proteins.

Substitutions, or point mutations, are much more subtle and have three possible effects. The table in Figure 3 shows how some point mutations may lead to common disorders.

  • Silent: The nucleotide is replaced, but the codon still produces the same amino acid.
  • Missense: The codon now results in a different amino acid, which may or may not significantly alter the protein’s function.
  • Nonsense: The codon now results in a “stop” command, truncating the protein at the location where the mutated codon is read; this almost always leads to a loss of protein functionality.

These mutations may occur anywhere in the DNA, so the effect of the mutation really depends on its location. If the mutation occurs in a gene, the result is an altered protein, but the mutation can also occur in a nongenic region of the DNA. In the latter case, the mutation has no effect on the organism.

A table aligns DNA/RNA to corresponding amino acids. Arrows connect common mutations to single nucleotides leading to various conditions, such as sickle-cell disease and Friedreich’s ataxia. Clinically important missense mutations generally change the properties of the coded amino acid residue between being basic, acidic, polar or nonpolar, while nonsense mutations result in a stop codon. In the case of cancers, mutations cause aggravation of the conditions by impairing tumor suppressors or activating oncogenes. Every U (uracil) in the mRNA corresponds to a T (thymine) in the original DNA. Therefore, mutations are often noted using T rather than U.
Figure 3. Notable small-scale mutations and resultant conditions.
copyright
Copyright © 2009 Mikael Häggström, Wikimedia Commons {PD} http://commons.wikimedia.org/wiki/File:Notable_mutations.svg

(Slides 17-18) The effects of large-scale mutations are more obvious than those of small-scale mutations. Duplication of multiple genes causes those genes to be overexpressed while deletions result in missing or incomplete genes. Mutations that change the order of the genes on the chromosome—such as deletions, inversions, insertions and translocations—result in close-together genes that were previously separated either by a set of genes on the same chromosome or on another chromosome altogether. When certain genes are positioned closely together, they may encode for a “fusion protein,” which is a protein that would not normally exist but is created by a mutation in which two genes were combined. Some of these new proteins give cells a growth advantage leading to tumors and cancer. Astrocytoma, a type of brain tumor, is the result of a deletion that creates a new fusion gene that permits the cells to become cancerous.

An illustration shows 46 chromosomes numbered and organized into 23 homologous pairs.
Figure 4. A normal human male karyotype with XY as the 23rd pair of chromosomes.
copyright
Copyright © 1997 National Cancer Institute, Wikimedia Commons https://commons.wikimedia.org/wiki/File:Karyotype_%28normal%29.jpg

(Slide 19) Often, large-scale mutations lead to cells that are not viable (and die due to the mutation). This is especially true with nondisjunction mutations in gametes in which entire chromosomes are missing or extra. In humans, when the gamete from a male (sperm) merges its chromosomes with the gamete from a female (egg), the offspring receive 23 chromosomes from each parent to form 23 homologous pairs, as shown in the karyotype in Figure 4. However, when one of the gametes has a nondisjunction mutation, the resulting offspring end up with only one homolog in a pair (monosomy) or with three homologs in a pair (trisomy). Most of the time, these offspring are not viable. The ones that do result in viable offspring will possess some noticeable differences due to the extra or missing chromosome; this alteration leads to a permanent syndrome in the offspring. The most well-known syndrome is trisomy 21, an extra 21st chromosome (this karyotype is shown in Figure 5); this particular nondisjunction mutation leads to Down syndrome.

An illustration that shows 47 chromosomes organized into numbered homologous pairs, with the exception being location 21 that has three copies of that chromosome (one extra).
Figure 5. A karyotype illustrating trisomy 21—a mutation that leads to Down syndrome.
copyright
Copyright © 2006 Human Genome Project, National Institutes of Health, Wikimedia Commons http://commons.wikimedia.org/wiki/File:Down_Syndrome_Karyotype.png

(Slide 20) What can influence mutations? Mutations naturally occur over time, which is the underlying cause of evolution. As we can see, evolution is a very slow process with a net benefit to an organism, but some environmental factors may influence or induce additional mutations. These induced mutations often lead to harmful diseases, such as cancer.

Exposure to certain chemicals is one environmental factor that may induce DNA mutations. Typically, anything that we identify as carcinogenic (may cause cancer) has negative side effects on DNA, and may lead to cancer. This includes the chemicals found in cigarette smoke as well as those found in meats cooked on the grill. These chemicals belong to a larger class called mutagens, meaning they can lead to changes in genetic material.

Chemicals are not the only types of mutagens that we encounter; physical mutagens also exist in the environment, namely radiation. Ultraviolet radiation from the sun can damage genetic material by changing the properties of nucleotides in the DNA. Overexposure to ultraviolet radiation is known to lead to skin cancer. X-rays and gamma radiation are also physical mutagens and forms of ionizing radiation; this means that these types of radiation possess enough energy to remove electrons from atoms, thus forming ions and affecting how different biomolecules interact. While a typical dose of x-rays received during a medical procedure is low, it does marginally increase a person’s cancer risk.

Alternatively, retroviruses such as HIV naturally experience mutations at a much higher rate than other organisms, which can be attributed to the fact that they possess RNA instead of DNA. The process by which RNA is copied and replicated is not as precise as that of DNA. Therefore, by the time our immune system has adjusted to fight a virus like HIV, the HIV virus has already mutated again and the immune system must start over. The mutations in the HIV’s RNA lead to alterations in the protein markers on the virus that the immune system targets, and if the target is always changing, it is almost impossible for the immune system to remove the virus.

(Slides 21-22) Engineering Connection: While mutations occur naturally over time, biological engineers are able to genetically modify various organisms. Humans have been genetically modifying plants and animals for thousands of years. Humans have accomplished this by selectively breeding or inbreeding in order to produce and “improve” specific traits, such as breeding watermelons to be larger and have fewer seeds or breeding chickens to have more white meat and more breast meat.

With the advancement of technology, engineers can directly manipulate the genetic code of plants and animals. Some examples of genetically modified (and controversial) organisms include disease-resistant papaya, vitamin A-rich rice and drought-tolerant corn. Currently, researchers are studying gene editing in the womb. If it is determined that an unborn child has a disease or disability, then we may one day be able to edit the genes of the unborn child and prevent the issue from appearing in the child.

Vocabulary/Definitions

chromosome: A long strand of DNA wrapped around a protein that stores instructions to create several proteins. Humans have 46 chromosomes composed of 23 pairs of homologous chromosomes.

disjunction: Normal separation of chromosomes during meiosis.

DNA: A molecule that contains an organism’s complete genetic information. Abbreviation for deoxyribonucleic acid.

DNA replication: The process by which DNA is copied and passed on to new cells.

gamete: A sex cell. In mammals, the sperm and eggs. Has half the chromosomes of the parent organism.

gene: A subset of DNA that provides instructions for a cell to build a single protein.

genome: The complete genetic information for an organism; it includes all of the chromosomes.

karyotype: A picture of an organism’s genome with the chromosomes organized by homologous pairs.

meiosis: A type of cell division that occurs in sexually reproducing organisms and typically results in four cells with half the number of chromosomes of the parent. In humans, meiosis results in the creation of sperm or eggs with 23 chromosomes each.

mitosis: A type of cell division that results in two identical cells with the same number of chromosomes as the parent.

monosomy: A situation in which a homolog is missing from a chromosome pair. For example, if only one homolog exists for chromosome 21, it is called monomsomy 21.

mutagen: A physical or chemical agent that affects genetic material.

mutation: A permanent alteration in either the DNA nucleotide sequence during DNA replication or a chromosome during meiosis or mitosis.

nondisjunction: The abnormal separation of chromosomes during meiosis.

protein synthesis: A process by which the instructions contained in DNA are used to produce proteins for a cell or organism.

trisomy: A situation in which an extra chromosome is present. For example, if three homologs exist for chromosome 21, it is called trisomy 21 or Down syndrome.

Associated Activities

  • Mutation Telephone - As a way to illustrate how DNA mutations can happen, students conduct an activity similar to the childhood “telephone” game that models the biological process related to the passage of DNA from one cell to another. Then, students act as predators to test how various mutation types (normal, substitution, deletion or insertion) affect the survivability of an organism in the wild, which serves as a demonstration of natural selection based on mutation.

Attachments

Assessment

Pre-Lesson Assessment

Mutation Questions: At the beginning of class, have students write short answers to the three questions on the Pre-Lesson Worksheet. Tip: To save paper and ink, since the color of the tiger in the photograph is important for this assessment, display the worksheet via projector and have students write their answers on their own papers. Students’ answers reveal their base understanding of genetics, traits and mutations.

Lesson Summary Assessment

Mutation Questions: After the lesson, have students write short answers to the four questions on the Post-Lesson Worksheet. Tip: To save paper and ink, since the color of the tiger in the photograph is important for this assessment, display the worksheet via projector and have students write their answers on their own papers. Students’ answers reveal their comprehension of the lesson subject matter and content.

Homework

Research: Have students choose a syndrome caused by a mutation (such as extra or missing chromosomes) and write a brief, 3-5 sentence paragraph on it. Make sure they mention the specific mutation to the chromosome that leads to the syndrome and what effects that mutation causes.

Contributors

Matthew Zelisko; Kimberly Anderson; Kent Kurashima

Copyright

© 2016 by Regents of the University of Colorado; original © 2015 University of Houston

Supporting Program

National Science Foundation GK-12 and Research Experience for Teachers (RET) Programs, University of Houston

Acknowledgements

This digital library content was developed by the University of Houston's College of Engineering under National Science Foundation GK-12 grant number DGE 0840889. However, these contents do not necessarily represent the policies of the NSF and you should not assume endorsement by the federal government.

Last modified: May 4, 2017

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